Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| PAAD | rs1235278 | chr21:37023113 | C/T | 5.81E-6 | 176 | 5.52 | 16.6 | 15.13 | KM Plot |
| PAAD | rs1235280 | chr21:37021338 | T/C | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs1235281 | chr21:37021009 | C/T | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs1235282 | chr21:37020968 | T/C | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs1235283 | chr21:37020561 | G/C | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs1235284 | chr21:37020050 | T/C | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs1235285 | chr21:37019887 | C/T | 2.29E-6 | 178 | 5.52 | 17.4 | 15.13 | KM Plot |
| PAAD | rs12356898 | chr10:102943205 | C/T | 5.83E-8 | 177 | 15.82 | 13.6 | 3.17 | KM Plot |
| PAAD | rs12359084 | chr10:2417320 | T/C | 2.97E-7 | 173 | 15.55 | 15.33 | 2.87 | KM Plot |
| PAAD | rs12402453 | chr1:200515120 | A/G | 0 | 170 | 15.23 | 16.13 | 1.03 | KM Plot |
| PAAD | rs12406344 | chr1:16228852 | A/C | 1.68E-6 | 178 | 15.67 | 12.88 | 3.43 | KM Plot |
| PAAD | rs12406632 | chr1:16228913 | T/C | 1.68E-6 | 178 | 15.67 | 12.88 | 3.43 | KM Plot |
| PAAD | rs12416897 | chr11:125716228 | A/T | 0.000114 | 175 | 15.87 | 12.2 | 4.1 | KM Plot |
| PAAD | rs12418149 | chr11:125531231 | G/A | 4.72E-5 | 178 | 16.03 | 11.6 | 4.1 | KM Plot |
| PAAD | rs12418427 | chr11:125608097 | G/A | 0.0001 | 178 | 15.95 | 12.2 | 4.1 | KM Plot |